ClinicalKnowledgeGraph
latest
Clinical Knowledge Graph
First steps
Getting Started with some Requirements
Getting Started with Neo4j
Getting Started with the CKG Build
Getting started with Windows
Getting started with Docker
(Testing)
Getting started
Connecting to the Clinical Knowledge Graph database
Create a new user in the graph database
Create a new project in the database
Upload project experimental data
Define data analysis parameters
Accessing the analysis report
Report notifications
Project Report
Generating a project report
Project report tabs
CKG Builder
Ontology sources and raw file parsers
Biomedical databases and resources
Parsing experimental data
Building the graph database from one Python module
Advanced Features
Clinical Knowledge Graph Statistics: Imports
Clinical Knowledge Graph Statistics: Database
Using Jupyter Notebooks with the Clinical Knowledge Graph
Testing notebooks
Retrieving data from the Clinical Knowledge Graph database
Standardising the data analysis
Visualisation plots
Python - R interface
System Requirements
API Reference
Graph Database Connector (graphdb_connector)
Graph Database Builder (graphdb_builder)
Report Manager (report_manager)
Analytics Core (analytics_core)
Notebooks (notebooks)
vis.py
ckg_utils.py
Credits
Backers
Contributing
History
Code of Conduct
ClinicalKnowledgeGraph
Docs
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API Reference
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Notebooks (notebooks)
Edit on GitHub
Notebooks (notebooks)
¶
vis.py
¶
vis_network
(
nodes
,
edges
,
physics=False
)
[source]
¶
draw
(
graph
,
options
,
physics=False
,
limit=100
)
[source]
¶