Graph Database Connector (graphdb_connector)¶

connector.py¶

getGraphDatabaseConnectionConfiguration(configuration=None, database=None)[source]¶

connectToDB(host='localhost', port=7687, user='neo4j', password='password')[source]¶

removeRelationshipDB(entity1, entity2, relationship)[source]¶

modifyEntityProperty(parameters)[source]¶: parameters: tuple with entity name, entity id, property name to modify, and value

sendQuery(driver, query, parameters={})[source]¶

getCursorData(driver, query, parameters={})[source]¶

create_node(driver, node_type, **kwargs)[source]¶

find_node(driver, node_type, **kwargs)[source]¶

query_utils.py¶

read_knowledge_queries(dataset_type='proteomics')[source]¶

read_queries(queries_file)[source]¶

list_queries(queries)[source]¶

find_queries_involving_nodes(queries, nodes, print_pretty=False)[source]¶

find_queries_involving_relationships(queries, rels)[source]¶

get_query(queries, query_id)[source]¶

get_description(query)[source]¶

get_nodes(query)[source]¶

get_relationships(query)[source]¶

map_node_name_to_id(driver, node, value)[source]¶