ClinicalKnowledgeGraph
latest
  • Clinical Knowledge Graph

First steps

  • Getting Started with some Requirements
  • Getting Started with Neo4j
  • Getting Started with the CKG Build
  • Getting started with Windows
  • Getting started with Docker (Testing)

Getting started

  • Connecting to the Clinical Knowledge Graph database
  • Create a new user in the graph database
  • Create a new project in the database
  • Upload project experimental data
  • Define data analysis parameters
  • Accessing the analysis report
  • Report notifications

Project Report

  • Generating a project report
  • Project report tabs

CKG Builder

  • Ontology sources and raw file parsers
  • Biomedical databases and resources
  • Parsing experimental data
  • Building the graph database from one Python module

Advanced Features

  • Clinical Knowledge Graph Statistics: Imports
  • Clinical Knowledge Graph Statistics: Database
  • Using Jupyter Notebooks with the Clinical Knowledge Graph
  • Testing notebooks
  • Retrieving data from the Clinical Knowledge Graph database
  • Standardising the data analysis
  • Visualisation plots
  • Python - R interface
  • System Requirements
  • API Reference
  • Credits
  • Backers
  • Contributing
  • History
  • Code of Conduct
ClinicalKnowledgeGraph
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© Copyright 2019, Alberto Santos, Ana Rita Colaço, Annelaura B. Nielsen Revision 6fa5fdb9.

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